Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VLDLR ENSPTRG00000020732

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Description

very low density lipoprotein receptor [Source:VGNC Symbol;Acc:VGNC:4901]

Location

Chromosome 9: 2,577,181-2,612,035 forward strand.

Pan_tro_3.0:CM000323.3

About this gene

This gene has 4 transcripts (splice variants), 212 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000042429.4	VLDLR-203	2625	874aa	ENSPTRP00000049510.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R6V0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000077380.1	VLDLR-201	5822	873aa	ENSPTRP00000063483.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RFS4 A0A6D2XKT5	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000096758.1	VLDLR-202	5738	845aa	ENSPTRP00000084360.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XRX0 K7AQJ6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000094870.1	VLDLR-204	2622	873aa	ENSPTRP00000063359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RFB5	-

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Summary

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