Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
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Supporting evidence
ID History
- Gene history

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Gene: HMBOX1 ENSPTRG00000020127

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Description

homeobox containing 1 [Source:VGNC Symbol;Acc:VGNC:12232]

Location

Chromosome 8: 28,465,616-28,570,272 forward strand.

Pan_tro_3.0:CM000322.4

About this gene

This gene has 4 transcripts (splice variants) and 277 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000106563.1	HMBOX1-201	1263	420aa	ENSPTRP00000075821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SH56 A0A6D2VW95	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000076640.1	HMBOX1-203	15138	405aa	ENSPTRP00000072453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S7D5 A0A6D2X9K6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000062276.4	HMBOX1-202	1161	386aa	ENSPTRP00000054832.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8N8D8 A0A6D2WYV6	-
ENSPTRT00000096109.1	HMBOX1-204	843	280aa	ENSPTRP00000082479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SZQ9	-

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Summary

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