Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: NKX3-1 ENSPTRG00000020081

.

Description

NK3 homeobox 1 [Source:VGNC Symbol;Acc:VGNC:14633]

Location

Chromosome 8: 23,077,461-23,081,721 reverse strand.

Pan_tro_3.0:CM000322.4

About this gene

This gene has 2 transcripts (splice variants), 169 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000106447.1	NKX3-1-201	3296	234aa	ENSPTRP00000081164.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X868 K7B547	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000037208.4	NKX3-1-202	480	159aa	ENSPTRP00000034386.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X2W8 H2QVW6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.