Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: IRF5 ENSPTRG00000019675

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Description

interferon regulatory factor 5 [Source:VGNC Symbol;Acc:VGNC:4405]

Location

Chromosome 7: 133,456,688-133,470,004 forward strand.

Pan_tro_3.0:CM000321.4

About this gene

This gene has 5 transcripts (splice variants), 218 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000080153.1	IRF5-201	3916	515aa	ENSPTRP00000076319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8QT42 A0A6D2WVC4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000036453.5	IRF5-202	2943	499aa	ENSPTRP00000033701.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8QT50 A0A6D2WE13	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000080690.1	IRF5-203	1533	510aa	ENSPTRP00000074183.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SAU9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000083256.1	IRF5-204	1242	413aa	ENSPTRP00000092324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TST6 A0A6D2W1A0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000080263.1	IRF5-205	1137	378aa	ENSPTRP00000067220.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RSC8	-

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Summary

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