Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: HOXA1 ENSPTRG00000019010

.

Description

homeobox A1 [Source:VGNC Symbol;Acc:VGNC:4389]

Location

Chromosome 7: 26,267,683-26,270,745 reverse strand.

Pan_tro_3.0:CM000321.4

About this gene

This gene has 2 transcripts (splice variants), 199 orthologues and 52 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000035146.5	HOXA1-201	2576	335aa	ENSPTRP00000032489.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XYY7 H2QUB3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000088178.1	HOXA1-202	559	137aa	ENSPTRP00000082382.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SZL1 A0A6D2W208	-

.

Summary

.

.