Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SPDEF ENSPTRG00000018065

.

Description

SAM pointed domain containing ETS transcription factor [Source:VGNC Symbol;Acc:VGNC:3710]

Location

Chromosome 6: 34,855,340-34,863,229 reverse strand.

Pan_tro_3.0:CM000320.3

About this gene

This gene has 2 transcripts (splice variants), 243 orthologues and 33 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000033394.3	SPDEF-201	2731	335aa	ENSPTRP00000030856.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W887 H2QSV0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000110097.1	SPDEF-202	2683	319aa	ENSPTRP00000093195.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TV88 A0A6D2Y5U8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.