Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CDX1 ENSPTRG00000017411

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Description

caudal type homeobox 1 [Source:VGNC Symbol;Acc:VGNC:11880]

Location

Chromosome 5: 150,360,747-150,382,843 forward strand.

Pan_tro_3.0:CM000319.3

About this gene

This gene has 3 transcripts (splice variants), 94 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000032206.6	CDX1-202	1765	265aa	ENSPTRP00000029751.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QRS8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000091918.1	CDX1-201	468	155aa	ENSPTRP00000080150.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SUA4	-
ENSPTRT00000094371.1	CDX1-203	177	58aa	ENSPTRP00000085096.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T792	-

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Summary

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