Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
Pathway
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External references
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ID History
- Gene history

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Gene: HMGXB3 ENSPTRG00000017408

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Description

HMG-box containing 3 [Source:VGNC Symbol;Acc:VGNC:4036]

Location

Chromosome 5: 150,198,590-150,253,663 forward strand.

Pan_tro_3.0:CM000319.3

About this gene

This gene has 3 transcripts (splice variants) and 200 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000079322.1	HMGXB3-201	4617	1538aa	ENSPTRP00000074021.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SC04 A0A6D2W1H7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000076919.1	HMGXB3-203	5969	1260aa	ENSPTRP00000067581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RTE3 A0A6D2Y612	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000032198.4	HMGXB3-202	5526	1292aa	ENSPTRP00000029744.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VXS8 H2QRS6	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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