Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: JADE2 ENSPTRG00000017242

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Description

jade family PHD finger 2 [Source:VGNC Symbol;Acc:VGNC:4055]

Location

Chromosome 5: 134,492,416-134,538,013 forward strand.

Pan_tro_3.0:CM000319.3

About this gene

This gene has 3 transcripts (splice variants), 210 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000088377.1	JADE2-201	6404	834aa	ENSPTRP00000083150.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T1P2 A0A6D2XQY4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000031923.4	JADE2-202	6275	791aa	ENSPTRP00000029497.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XG17 K7CJP9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000078253.1	JADE2-203	1530	509aa	ENSPTRP00000067445.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RRY3 A0A6D2Y7L2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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