Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LEF1 ENSPTRG00000016352

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Description

lymphoid enhancer binding factor 1 [Source:VGNC Symbol;Acc:VGNC:6477]

Location

Chromosome 4: 110,993,200-111,117,272 reverse strand.

Pan_tro_3.0:CM000318.3

About this gene

This gene has 6 transcripts (splice variants), 207 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000106149.1	LEF1-204	6544	414aa	ENSPTRP00000079959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SSM9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000091916.1	LEF1-203	6585	399aa	ENSPTRP00000072379.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S5R9 A0A6D2VUE5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000110145.1	LEF1-202	6499	371aa	ENSPTRP00000082837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T0W4 A0A6D2Y3G0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000030426.5	LEF1-201	2632	303aa	ENSPTRP00000028092.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VTJ0 H2QQ05	-
ENSPTRT00000076565.1	LEF1-205	1209	402aa	ENSPTRP00000074142.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SCB8	-
ENSPTRT00000096516.1	LEF1-206	477	158aa	ENSPTRP00000087847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TF15	-

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Summary

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