Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: AFF1 ENSPTRG00000016255

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Description

ALF transcription elongation factor 1 [Source:VGNC Symbol;Acc:VGNC:2949]

Location

Chromosome 4: 89,292,748-89,491,390 forward strand.

Pan_tro_3.0:CM000318.3

About this gene

This gene has 5 transcripts (splice variants), 207 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000103669.1	AFF1-201	4871	1218aa	ENSPTRP00000086127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2YAL1 K7AL91	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000030252.6	AFF1-203	3633	1210aa	ENSPTRP00000027923.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XRE0 H2QPU6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000082517.1	AFF1-204	3600	1199aa	ENSPTRP00000088947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TI76	-
ENSPTRT00000096788.1	AFF1-205	3591	1196aa	ENSPTRP00000074253.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SB32	-
ENSPTRT00000090685.1	AFF1-202	3099	1020aa	ENSPTRP00000085891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T9H9	-

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Summary

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