Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: YTHDC1 ENSPTRG00000016105

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Description

YTH N6-methyladenosine RNA binding protein C1 [Source:VGNC Symbol;Acc:VGNC:12940]

Location

Chromosome 4: 62,088,013-62,124,727 forward strand.

Pan_tro_3.0:CM000318.3

About this gene

This gene has 4 transcripts (splice variants), 202 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000030007.5	YTHDC1-201	3341	735aa	ENSPTRP00000053484.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VX54 H2RA35	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000030009.4	YTHDC1-202	3263	709aa	ENSPTRP00000027697.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y8G1 H2QPJ9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000108572.1	YTHDC1-204	2184	727aa	ENSPTRP00000077492.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SKQ4	-
ENSPTRT00000080997.1	YTHDC1-203	1611	536aa	ENSPTRP00000071213.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S2Q3	-

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Summary

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