Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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ID History
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Gene: HPS4 ENSPTRG00000014194

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Description

HPS4 biosis of lysosomal organelles complex 3 subunit 2 [Source:VGNC Symbol;Acc:VGNC:8860]

Location

Chromosome 22: 12,982,094-13,014,459 reverse strand.

Pan_tro_3.0:CM000335.3

About this gene

This gene has 3 transcripts (splice variants) and 201 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000026521.3	HPS4-201	4540	708aa	ENSPTRP00000024439.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QLE6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000100657.1	HPS4-202	2325	677aa	ENSPTRP00000091614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TQT5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000100103.1	HPS4-203	2028	675aa	ENSPTRP00000082984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T166	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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