Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RUNX1 ENSPTRG00000013883

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Description

RUNX family transcription factor 1 [Source:VGNC Symbol;Acc:VGNC:55699]

Location

Chromosome 21: 21,254,713-21,518,351 reverse strand.

Pan_tro_3.0:CM004190.1

About this gene

This gene has 6 transcripts (splice variants), 207 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000086490.1	RUNX1-203	1443	480aa	ENSPTRP00000092866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TUG2 A0A6D2XVV6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000025893.5	RUNX1-201	5688	453aa	ENSPTRP00000053966.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W7X6 H2RAI7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000099382.1	RUNX1-202	5496	389aa	ENSPTRP00000069827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RZU0 A0A6D2WR49	-
ENSPTRT00000089297.1	RUNX1-206	3353	250aa	ENSPTRP00000074529.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2YAK9 K7B1W9	-
ENSPTRT00000086749.1	RUNX1-204	1428	475aa	ENSPTRP00000074636.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SCC8	-
ENSPTRT00000089856.1	RUNX1-205	1389	462aa	ENSPTRP00000088829.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3THX9	-

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Summary

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