Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SCAF4 ENSPTRG00000013848

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Description

SR-related CTD associated factor 4 [Source:VGNC Symbol;Acc:VGNC:8670]

Location

Chromosome 21: 18,095,360-18,157,168 reverse strand.

Pan_tro_3.0:CM004190.1

About this gene

This gene has 3 transcripts (splice variants), 233 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000025827.5	SCAF4-201	4229	1147aa	ENSPTRP00000023838.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y7E7 H2QKY4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000109773.1	SCAF4-202	4184	1132aa	ENSPTRP00000070133.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S0N5 A0A6D2VSB5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000084131.1	SCAF4-203	3327	1108aa	ENSPTRP00000080411.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SV07	-

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Summary

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