Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: NFATC2 ENSPTRG00000013628

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Description

nuclear factor of activated T cells 2 [Source:VGNC Symbol;Acc:VGNC:9897]

Location

Chromosome 20: 53,168,690-53,360,328 reverse strand.

Pan_tro_3.0:CM000334.4

About this gene

This gene has 4 transcripts (splice variants), 273 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000049563.5	NFATC2-204	2817	938aa	ENSPTRP00000047128.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R4F5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000101658.1	NFATC2-203	7555	901aa	ENSPTRP00000072493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S7H6 A0A6D2VS80	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000095125.1	NFATC2-201	7532	921aa	ENSPTRP00000086670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TBS4 A0A6D2Y2C0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000106697.1	NFATC2-202	7466	905aa	ENSPTRP00000093116.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TV64 A0A6D2WIP9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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