Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPRN ENSPTRG00000012952

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Description

protein tyrosine phosphatase receptor type N [Source:VGNC Symbol;Acc:VGNC:6372]

Location

Chromosome 2B: 110,208,926-110,228,856 reverse strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 4 transcripts (splice variants), 255 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000100528.1	PTPRN-201	3780	979aa	ENSPTRP00000077663.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XUF4 K6ZLK2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000078713.1	PTPRN-202	3693	950aa	ENSPTRP00000090244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2YAZ7 K7C882	-
ENSPTRT00000023995.4	PTPRN-203	2913	970aa	ENSPTRP00000048736.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R644	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000087523.1	PTPRN-204	2637	878aa	ENSPTRP00000062240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RC73	-

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Summary

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