Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: CARF ENSPTRG00000012824

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Description

calcium responsive transcription factor [Source:VGNC Symbol;Acc:VGNC:118]

Location

Chromosome 2B: 93,590,024-93,665,425 forward strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 2 transcripts (splice variants) and 156 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000098019.1	CARF-202	7238	725aa	ENSPTRP00000082508.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T0X6 A0A6D2XG05	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000023783.5	CARF-201	6568	649aa	ENSPTRP00000021924.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8N5G5 A0A6D2WCX2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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