PMS1 homolog 1, mismatch repair system component [Source:VGNC Symbol;Acc:VGNC:2786]
Chromosome 2B: 80,332,115-80,426,247 forward strand.
Pan_tro_3.0:CM000316.3
This gene has 8 transcripts (splice variants), 209 orthologues and 5 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSPTRT00000098471.1 | PMS1-202 | 3698 | 932aa | ENSPTRP00000066616.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RPI6 A0A6D2WE62 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ENSPTRT00000023609.4 | PMS1-204 | 3398 | 893aa | ENSPTRP00000021775.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A6D2WMT7 H2QJ52 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000085368.1 | PMS1-203 | 3212 | 770aa | ENSPTRP00000071087.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3S275 A0A6D2WX72 | - |
| ENSPTRT00000085291.1 | PMS1-206 | 2004 | 667aa | ENSPTRP00000086553.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3TBE6 A0A6D2VY95 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000085325.1 | PMS1-208 | 1938 | 645aa | ENSPTRP00000066868.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RRB5 | - |
| ENSPTRT00000079494.1 | PMS1-201 | 1548 | 165aa | ENSPTRP00000071043.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3S279 A0A6D2WDF3 | - |
| ENSPTRT00000101964.1 | PMS1-207 | 747 | 248aa | ENSPTRP00000089278.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3TJ43 A0A6D2X9Z9 | - |
| ENSPTRT00000088713.1 | PMS1-205 | 546 | 181aa | ENSPTRP00000075569.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3SEV7 A0A6D2Y9Y2 | - |
