Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CXCR4 ENSPTRG00000012501

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Description

C-X-C motif chemokine receptor 4 [Source:VGNC Symbol;Acc:VGNC:156]

Location

Chromosome 2B: 25,768,266-25,776,092 reverse strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 3 transcripts (splice variants), 282 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000088941.1	CXCR4-202	1272	423aa	ENSPTRP00000074646.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SCD8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000099018.1	CXCR4-201	5697	352aa	ENSPTRP00000069173.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A663D9N7 K7DTL4 P61072	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000023193.3	CXCR4-203	1068	355aa	ENSPTRP00000021386.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2K6HH78	-

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Summary

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