Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: ZNF550 ENSPTRG00000011560

.

Description

zinc finger protein 550 [Source:VGNC Symbol;Acc:VGNC:11468]

Location

Chromosome 19: 60,123,248-60,150,164 reverse strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 3 transcripts (splice variants), 138 orthologues and 64 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000109120.1	ZNF550-202	4681	422aa	ENSPTRP00000068336.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8JLS0 A0A6D2VYR4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000010399.4	ZNF550-203	1146	381aa	ENSPTRP00000009623.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WNF5 H2Q783	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000081282.1	ZNF550-201	378	125aa	ENSPTRP00000079981.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SSK0 A0A6D2WJS3	-

.

Summary

.

.