Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ZNF549 ENSPTRG00000011559

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Description

zinc finger protein 549 [Source:VGNC Symbol;Acc:VGNC:2150]

Location

Chromosome 19: 60,115,030-60,140,492 forward strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 4 transcripts (splice variants), 143 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000018233.4	ZNF549-202	4420	640aa	ENSPTRP00000016889.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VWQ1 H2QED3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000087202.1	ZNF549-201	4377	627aa	ENSPTRP00000079858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SS57 A0A6D2Y1T1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000077960.1	ZNF549-204	315	104aa	ENSPTRP00000071085.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S265 A0A6D2VUI8	-
ENSPTRT00000091481.1	ZNF549-203	42	13aa	ENSPTRP00000090579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TMW4	-

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Summary

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