Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HIF3A ENSPTRG00000011180

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Description

hypoxia inducible factor 3 subunit alpha [Source:VGNC Symbol;Acc:VGNC:7686]

Location

Chromosome 19: 48,390,505-48,437,179 forward strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 5 transcripts (splice variants), 189 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000100033.1	HIF3A-201	5886	669aa	ENSPTRP00000091774.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TR97 A0A6D2VTN3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000097584.1	HIF3A-203	5890	667aa	ENSPTRP00000086802.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TC33 A0A6D2Y810	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000085053.1	HIF3A-202	5877	600aa	ENSPTRP00000068434.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RUN2 A0A6D2VU47	-
ENSPTRT00000020775.5	HIF3A-204	1785	594aa	ENSPTRP00000048600.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WY44 H2R5Y9	-
ENSPTRT00000107363.1	HIF3A-205	1353	450aa	ENSPTRP00000078443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SNE4 A0A6D2XJ54	-

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Summary

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