Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: NFIC ENSPTRG00000010261

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Description

nuclear factor I C [Source:VGNC Symbol;Acc:VGNC:11240]

Location

Chromosome 19: 3,470,567-3,628,002 forward strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 7 transcripts (splice variants), 204 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000100545.1	NFIC-204	1945	535aa	ENSPTRP00000064747.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RJB0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000089577.1	NFIC-207	7883	439aa	ENSPTRP00000078470.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SNC9 A0A6D2VTR1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000086419.1	NFIC-202	7882	430aa	ENSPTRP00000067453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RS21 A0A6D2WMD8	-
ENSPTRT00000094118.1	NFIC-205	1615	508aa	ENSPTRP00000063173.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8J2S0 A0A6D2W9F7	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000018841.6	NFIC-201	1593	530aa	ENSPTRP00000017437.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WSX4 H2QEY5	-
ENSPTRT00000079455.1	NFIC-206	1375	428aa	ENSPTRP00000083428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T2G9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000110041.1	NFIC-203	1221	406aa	ENSPTRP00000079908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SSA5 A0A6D2XJI7	-

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Summary

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