Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TCF3 ENSPTRG00000010211

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Description

transcription factor 3 [Source:VGNC Symbol;Acc:VGNC:13532]

Location

Chromosome 19: 1,599,026-1,642,198 reverse strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 5 transcripts (splice variants), 270 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000105333.1	TCF3-204	2022	673aa	ENSPTRP00000067488.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RS53	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000105363.1	TCF3-201	5036	658aa	ENSPTRP00000068562.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RV13 A0A6D2WHY9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000084775.1	TCF3-202	5021	654aa	ENSPTRP00000061819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8J1T8 A0A6D2X3D8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000081064.1	TCF3-203	5012	651aa	ENSPTRP00000079220.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SQA1 A0A6D2WH36	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000066105.3	TCF3-205	1911	636aa	ENSPTRP00000057680.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2RCQ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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