Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NFATC1 ENSPTRG00000010129

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Description

nuclear factor of activated T cells 1 [Source:VGNC Symbol;Acc:VGNC:10017]

Location

Chromosome 18: 77,240,407-77,375,636 forward strand.

Pan_tro_3.0:CM000332.3

About this gene

This gene has 5 transcripts (splice variants), 262 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000103041.1	NFATC1-205	2562	853aa	ENSPTRP00000065668.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RLV4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000089627.1	NFATC1-204	3704	703aa	ENSPTRP00000063564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RFZ4 A0A6D2X8C7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000105639.1	NFATC1-201	3035	716aa	ENSPTRP00000092978.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W1Z7 K7CDR1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000018581.5	NFATC1-203	2142	713aa	ENSPTRP00000049331.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y738 H2R6P5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000101657.1	NFATC1-202	1905	634aa	ENSPTRP00000088306.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TGD4	-

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Summary

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