Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CCDC40 ENSPTRG00000009735

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Description

coiled-coil domain containing 40 [Source:VGNC Symbol;Acc:VGNC:9227]

Location

Chromosome 17: 79,666,640-79,736,817 forward strand.

Pan_tro_3.0:CM000331.3

About this gene

This gene has 4 transcripts (splice variants) and 190 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000017875.4	CCDC40-201	4298	1142aa	ENSPTRP00000016562.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QE08	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000098068.1	CCDC40-204	3033	1011aa	ENSPTRP00000087757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TES3	-
ENSPTRT00000098548.1	CCDC40-203	1740	579aa	ENSPTRP00000089484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TJR7 A0A6D2VWM0	-
ENSPTRT00000108576.1	CCDC40-202	1437	478aa	ENSPTRP00000068122.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RTV2 A0A6D2VXW8	-

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Summary

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