Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: UBTF ENSPTRG00000009269

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Description

upstream binding transcription factor [Source:VGNC Symbol;Acc:VGNC:108186]

Location

Chromosome 17: 13,378,227-13,395,376 forward strand.

Pan_tro_3.0:CM000331.3

About this gene

This gene has 4 transcripts (splice variants), 202 orthologues and 32 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000106098.1	UBTF-201	5546	764aa	ENSPTRP00000075608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X7E4 K7B7K3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000102142.1	UBTF-202	4681	727aa	ENSPTRP00000086160.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WUW0 K7CPC0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000099732.1	UBTF-203	2274	757aa	ENSPTRP00000088071.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TFN2	-
ENSPTRT00000046012.5	UBTF-204	1950	649aa	ENSPTRP00000045288.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R3C7	-

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Summary

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