Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SALL1 ENSPTRG00000008108

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Description

spalt like transcription factor 1 [Source:VGNC Symbol;Acc:VGNC:13764]

Location

Chromosome 16: 41,705,264-41,721,770 reverse strand.

Pan_tro_3.0:CM000330.3

About this gene

This gene has 3 transcripts (splice variants), 235 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000096651.1	SALL1-201	6356	1326aa	ENSPTRP00000064582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RIT7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000014949.6	SALL1-202	3966	1321aa	ENSPTRP00000013842.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QB34	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000091671.1	SALL1-203	105	34aa	ENSPTRP00000070237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RZW1 A0A6D2XBE5	-

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Summary

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