Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SMG1 ENSPTRG00000007825

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Description

SMG1 nonsense mediated mRNA decay associated PI3K related kinase [Source:VGNC Symbol;Acc:VGNC:10344]

Location

Chromosome 16: 18,381,339-18,489,848 reverse strand.

Pan_tro_3.0:CM000330.3

About this gene

This gene has 3 transcripts (splice variants), 181 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000042600.5	SMG1-201	10833	3610aa	ENSPTRP00000039960.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R014	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000101307.1	SMG1-202	1824	607aa	ENSPTRP00000085006.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T706	-
ENSPTRT00000098629.1	SMG1-203	1155	384aa	ENSPTRP00000081974.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SY94	-

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Summary

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