Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: NKX2-1 ENSPTRG00000006275

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Description

NK2 homeobox 1 [Source:VGNC Symbol;Acc:VGNC:3364]

Location

Chromosome 14: 20,490,646-20,495,467 reverse strand.

Pan_tro_3.0:CM000328.3

About this gene

This gene has 2 transcripts (splice variants), 204 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000091553.1	NKX2-1-202	1206	401aa	ENSPTRP00000072897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S7F0 A0A6D2XQP8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000042982.4	NKX2-1-201	2679	371aa	ENSPTRP00000039894.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8MI86 A0A6D2XBD5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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