Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SUPT20H ENSPTRG00000005791

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Description

SPT20 homolog, SAGA complex component [Source:VGNC Symbol;Acc:VGNC:7305]

Location

Chromosome 13: 21,777,417-21,828,950 reverse strand.

Pan_tro_3.0:CM000327.3

About this gene

This gene has 6 transcripts (splice variants), 210 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000108209.1	SUPT20H-203	3081	811aa	ENSPTRP00000071034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S377 A0A6D2XFL0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000095164.1	SUPT20H-201	2985	733aa	ENSPTRP00000062210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8MLG9 A0A6D2XTZ2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000010652.4	SUPT20H-202	2945	779aa	ENSPTRP00000009858.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WKS8 H2Q7F7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000090023.1	SUPT20H-204	2259	752aa	ENSPTRP00000083310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T266	-
ENSPTRT00000084578.1	SUPT20H-205	2127	708aa	ENSPTRP00000078735.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SP37	-
ENSPTRT00000081274.1	SUPT20H-206	1533	510aa	ENSPTRP00000078936.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SQX9	-

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Summary

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