Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HNF1A ENSPTRG00000005551

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Description

HNF1 homeobox A [Source:VGNC Symbol;Acc:VGNC:13130]

Location

Chromosome 12: 124,246,378-124,271,245 forward strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 8 transcripts (splice variants), 127 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000100160.1	HNF1A-201	4429	662aa	ENSPTRP00000084678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T729 A0A6D2XFZ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000010185.3	HNF1A-202	4357	638aa	ENSPTRP00000009420.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W3K9 H2Q721	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000111368.1	HNF1A-205	1599	532aa	ENSPTRP00000070666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S120	-
ENSPTRT00000107562.1	HNF1A-207	1419	472aa	ENSPTRP00000092513.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TTI5	-
ENSPTRT00000091028.1	HNF1A-206	1365	454aa	ENSPTRP00000089682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TKC6	-
ENSPTRT00000085431.1	HNF1A-208	1185	394aa	ENSPTRP00000067152.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RR72	-
ENSPTRT00000095029.1	HNF1A-204	708	235aa	ENSPTRP00000080410.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3STX3	-
ENSPTRT00000108302.1	HNF1A-203	375	124aa	ENSPTRP00000069081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RWI5	-

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Summary

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