Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NR1H4 ENSPTRG00000005345

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Description

nuclear receptor subfamily 1 group H member 4 [Source:VGNC Symbol;Acc:VGNC:5505]

Location

Chromosome 12: 103,265,270-103,356,142 forward strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 4 transcripts (splice variants), 389 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000107829.1	NR1H4-204	2206	486aa	ENSPTRP00000072319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S5L3 A0A6D2WFS2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000009829.6	NR1H4-201	3147	472aa	ENSPTRP00000009088.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WHK3 H2Q6P6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000105342.1	NR1H4-202	1278	425aa	ENSPTRP00000075060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SDF1 A0A6D2WWJ2	-
ENSPTRT00000090727.1	NR1H4-203	138	45aa	ENSPTRP00000067629.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RSK8 A0A6D2XUG0	-

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Summary

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