Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CNTN1 ENSPTRG00000004834

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Description

contactin 1 [Source:VGNC Symbol;Acc:VGNC:5342]

Location

Chromosome 12: 49,047,113-49,222,799 reverse strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 8 transcripts (splice variants), 278 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000104894.1	CNTN1-203	3087	1028aa	ENSPTRP00000075546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SEU3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000085169.1	CNTN1-202	5671	1018aa	ENSPTRP00000089967.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TL46 A0A6D2XZP0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000081828.1	CNTN1-201	5481	1007aa	ENSPTRP00000074415.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SBJ2 A0A6D2Y8Q4	-
ENSPTRT00000087667.1	CNTN1-207	4004	627aa	ENSPTRP00000084878.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8LR27 A0A6D2W0A0	-
ENSPTRT00000046590.3	CNTN1-204	3021	1006aa	ENSPTRP00000046202.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R3X0	-
ENSPTRT00000096610.1	CNTN1-205	2988	995aa	ENSPTRP00000092545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TTG1	-
ENSPTRT00000085110.1	CNTN1-206	2958	985aa	ENSPTRP00000081441.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SWW1	-
ENSPTRT00000105110.1	CNTN1-208	1875	624aa	ENSPTRP00000084557.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T5R0	-

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Summary

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