Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: BMAL2 ENSPTRG00000004788

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Description

aryl hydrocarbon receptor nuclear translocator like 2 [Source:VGNC Symbol;Acc:VGNC:4935]

Location

Chromosome 12: 63,402,659-63,495,032 reverse strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 5 transcripts (splice variants), 247 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000085392.1	BMAL2-201	6824	635aa	ENSPTRP00000080587.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SVJ1 A0A6D2WFZ6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000110847.1	BMAL2-202	6782	621aa	ENSPTRP00000091962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TRW6 A0A6D2VS98	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000081393.1	BMAL2-203	6713	598aa	ENSPTRP00000069990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RZE6 A0A6D2WPP2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000077142.1	BMAL2-205	1836	540aa	ENSPTRP00000086908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TCE1 A0A6D2Y7X8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000008843.2	BMAL2-204	1806	601aa	ENSPTRP00000008173.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y056 H2Q5N1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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