Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: CAPN1 ENSPTRG00000003869

.

Description

calpain 1 [Source:VGNC Symbol;Acc:VGNC:7514]

Location

Chromosome 11: 65,225,043-65,253,693 forward strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 3 transcripts (splice variants), 224 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000107107.1	CAPN1-202	2202	733aa	ENSPTRP00000067819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RT65	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000007233.5	CAPN1-203	2145	714aa	ENSPTRP00000006670.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VY41 K7CEN7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000082353.1	CAPN1-201	606	201aa	ENSPTRP00000082697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T0H6 A0A6D2XUI3	-

.

Summary

.

.