Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TUB ENSPTRG00000003327

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Description

TUB bipartite transcription factor [Source:VGNC Symbol;Acc:VGNC:12767]

Location

Chromosome 11: 7,836,603-7,934,724 forward strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 4 transcripts (splice variants), 205 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000006301.5	TUB-202	6588	561aa	ENSPTRP00000005811.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WS93 H2Q349	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000097956.1	TUB-204	7405	460aa	ENSPTRP00000076527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SHQ8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000096854.1	TUB-203	6485	506aa	ENSPTRP00000070375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XJN9 K7CYM8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000079389.1	TUB-201	6340	512aa	ENSPTRP00000080105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SU63 A0A6D2WUC0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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