Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: IRF7 ENSPTRG00000003126

.

Description

interferon regulatory factor 7 [Source:VGNC Symbol;Acc:VGNC:11843]

Location

Chromosome 11: 537,324-540,855 reverse strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 5 transcripts (splice variants), 201 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000093345.1	IRF7-201	2128	516aa	ENSPTRP00000073107.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W4T9 K7C6M8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000091413.1	IRF7-202	2043	503aa	ENSPTRP00000078546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XU98 K7B1S0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000077904.1	IRF7-203	2041	487aa	ENSPTRP00000093629.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TWM7 A0A6D2XZ45	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000005963.3	IRF7-204	1179	392aa	ENSPTRP00000005508.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2Q2V3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000091569.1	IRF7-205	579	192aa	ENSPTRP00000071016.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S2F0	-

.

Summary

.

.