Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PAX2 ENSPTRG00000002853

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Description

paired box 2 [Source:VGNC Symbol;Acc:VGNC:5588]

Location

Chromosome 10: 102,166,592-102,263,932 forward strand.

Pan_tro_3.0:CM000324.3

About this gene

This gene has 3 transcripts (splice variants), 254 orthologues and 58 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000094121.1	PAX2-201	6977	417aa	ENSPTRP00000091068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TPA8 A0A6D2X631	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000106411.1	PAX2-203	6907	394aa	ENSPTRP00000071609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S4V9 A0A6D2Y6J6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000005418.4	PAX2-202	4602	396aa	ENSPTRP00000005012.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XBJ4 H2Q2F7	-

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Summary

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