Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NR5A2 ENSPTRG00000001818

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Description

nuclear receptor subfamily 5 group A member 2 [Source:VGNC Symbol;Acc:VGNC:6923]

Location

Chromosome 1: 178,862,285-179,015,439 forward strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 4 transcripts (splice variants), 228 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000003299.3	NR5A2-202	5083	541aa	ENSPTRP00000003036.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XWY6 H2Q0V0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000076858.1	NR5A2-204	8365	469aa	ENSPTRP00000079398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SR19 A0A6D2WPC5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000079077.1	NR5A2-201	4996	495aa	ENSPTRP00000063522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RGL7 A0A6D2WEP6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000104106.1	NR5A2-203	1623	540aa	ENSPTRP00000064891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RKK0	-

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Summary

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