LIM homeobox 9 [Source:VGNC Symbol;Acc:VGNC:1299]
Chromosome 1: 176,712,160-176,731,617 forward strand.
Pan_tro_3.0:CM000314.3
This gene has 5 transcripts (splice variants), 203 orthologues and 21 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSPTRT00000099972.1 | LHX9-204 | 3866 | 397aa | ENSPTRP00000078973.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3SPX4 A0A6D2WT87 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ENSPTRT00000003288.7 | LHX9-201 | 1167 | 388aa | ENSPTRP00000003025.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A6D2WCF6 H2Q0U6 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| ENSPTRT00000077601.1 | LHX9-202 | 1167 | 388aa | ENSPTRP00000083785.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3T3J6 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| ENSPTRT00000102321.1 | LHX9-203 | 1011 | 336aa | ENSPTRP00000062207.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RC14 A0A6D2W9A8 | - |
| ENSPTRT00000089534.1 | LHX9-205 | 165 | 55aa | ENSPTRP00000084243.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3T4T6 A0A6D2WWE6 | - |
