Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COP1 ENSPTRG00000001711

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Description

COP1 E3 ubiquitin ligase [Source:VGNC Symbol;Acc:VGNC:9457]

Gene Synonyms

RFWD2

Location

Chromosome 1: 154,438,758-154,712,199 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 4 transcripts (splice variants), 219 orthologues and 27 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000058486.3	COP1-201	3036	731aa	ENSPTRP00000051495.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VW47 H2R8E1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000087689.1	COP1-202	2964	707aa	ENSPTRP00000090681.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TP18 A0A6D2Y241	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000091353.1	COP1-204	1137	208aa	ENSPTRP00000079329.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SQN7	-
ENSPTRT00000080751.1	COP1-203	630	209aa	ENSPTRP00000072703.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S843	-

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Summary

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