Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL11A1 ENSPTRG00000001017

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Description

collagen type XI alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:10666]

Location

Chromosome 1: 103,631,704-103,865,684 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 4 transcripts (splice variants), 295 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000109807.1	COL11A1-202	7697	1818aa	ENSPTRP00000088916.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TI23 A0A6D2XKT8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000001907.4	COL11A1-201	7659	1806aa	ENSPTRP00000001750.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W5P1 H2PZI3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000098410.1	COL11A1-203	5304	1767aa	ENSPTRP00000075594.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SEY1 A0A6D2Y1C6	-
ENSPTRT00000102694.1	COL11A1-204	5073	1690aa	ENSPTRP00000066328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RPT1 A0A6D2W064	-

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Summary

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