Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LHX8 ENSPTRG00000000868

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Description

LIM homeobox 8 [Source:VGNC Symbol;Acc:VGNC:1298]

Location

Chromosome 1: 75,236,295-75,266,975 forward strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 5 transcripts (splice variants), 265 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000093756.1	LHX8-203	1134	377aa	ENSPTRP00000072266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S5M9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000047154.2	LHX8-205	1885	346aa	ENSPTRP00000044424.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VUT0 H2R2T0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000093902.1	LHX8-202	1074	357aa	ENSPTRP00000083158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T2Q4	-
ENSPTRT00000086571.1	LHX8-201	1071	356aa	ENSPTRP00000092616.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TTS0 A0A6D2WVZ1	-
ENSPTRT00000099749.1	LHX8-204	882	293aa	ENSPTRP00000068579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RW93	-

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Summary

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