Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NFIA ENSPTRG00000000802

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Description

nuclear factor I A [Source:VGNC Symbol;Acc:VGNC:10004]

Location

Chromosome 1: 60,711,272-61,315,918 forward strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 8 transcripts (splice variants), 223 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000059144.5	NFIA-203	1665	554aa	ENSPTRP00000052250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XWP8 H2R915	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000100478.1	NFIA-201	1599	532aa	ENSPTRP00000071626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S469 A0A6D2VZ70	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000101089.1	NFIA-202	1506	501aa	ENSPTRP00000066963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RQL8 A0A6D2VSF2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000089289.1	NFIA-204	1497	498aa	ENSPTRP00000066017.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XN37 K7ASW7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000079493.1	NFIA-205	1464	487aa	ENSPTRP00000087568.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TEE2 A0A6D2WCE4	-
ENSPTRT00000091056.1	NFIA-206	1401	466aa	ENSPTRP00000082551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SZY2 A0A6D2WAM4	-
ENSPTRT00000078105.1	NFIA-207	1143	380aa	ENSPTRP00000079054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SPU6 A0A6D2VTW3	-
ENSPTRT00000108657.1	NFIA-208	513	170aa	ENSPTRP00000080608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SUE3	-

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Summary

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