Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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External references
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ID History
- Gene history

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Gene: CASZ1 ENSPTRG00000000133

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Description

castor zinc finger 1 [Source:VGNC Symbol;Acc:VGNC:462]

Location

Chromosome 1: 10,092,698-10,147,611 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 2 transcripts (splice variants) and 209 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000000306.5	CASZ1-201	4938	1646aa	ENSPTRP00000000263.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2PXZ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000101954.1	CASZ1-202	4085	1166aa	ENSPTRP00000078401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SPF2 A0A6D2WP00	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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