Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VSX1 ENSPPYG00000010782

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Description

visual system homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12723]

Location

Primary_assembly 20: 20,519,812-20,529,991 reverse strand.

Susie_PABv2:CM009282.2

About this gene

This gene has 3 transcripts (splice variants) and 174 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPPYT00000012521.2	VSX1-203	1098	365aa	ENSPPYP00000012046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2P187	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPPYT00000039604.1	VSX1-201	906	301aa	ENSPPYP00000033943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8S363	-
ENSPPYT00000034123.1	VSX1-202	711	236aa	ENSPPYP00000033166.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8S381	-

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Summary

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