Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: rfx1a ENSONIG00000002158

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Description

regulatory factor X, 1a (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-070424-94]

Location

Primary_assembly LG4: 16,912,543-16,929,270 forward strand.

O_niloticus_UMD_NMBU:CM007485.2

About this gene

This gene has 6 transcripts (splice variants), 189 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSONIT00000041692.1	rfx1a-201	5335	879aa	ENSONIP00000038031.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSONIT00000072192.1	rfx1a-203	4998	866aa	ENSONIP00000034911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSONIT00000037722.1	rfx1a-205	4954	858aa	ENSONIP00000033108.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSONIT00000057465.1	rfx1a-206	4366	662aa	ENSONIP00000051615.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSONIT00000085934.1	rfx1a-202	3233	560aa	ENSONIP00000067471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSONIT00000002689.2	rfx1a-204	2555	844aa	ENSONIP00000002688.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3J1E8	-

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Summary

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