Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VPS54 ENSOCUG00000002143

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Description

VPS54 subunit of GARP complex [Source:HGNC Symbol;Acc:HGNC:18652]

Location

Chromosome 2: 122,344,358-122,469,894 forward strand.

OryCun2.0:CM000791.1

About this gene

This gene has 6 transcripts (splice variants) and 206 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSOCUT00000002147.4	VPS54-201	3220	977aa	ENSOCUP00000001852.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G1SGX1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSOCUT00000061190.1	VPS54-202	3145	952aa	ENSOCUP00000047064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSOCUT00000056735.1	VPS54-203	3112	941aa	ENSOCUP00000048983.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSOCUT00000056875.1	VPS54-204	3067	926aa	ENSOCUP00000042806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSOCUT00000059676.1	VPS54-205	2959	890aa	ENSOCUP00000028100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSOCUT00000060492.1	VPS54-206	2662	815aa	ENSOCUP00000035262.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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